VAMPS
The Visualization and Analysis
of Microbial Population Structures
This site uses taxonomic assignment for visualization (use OTUs instead).
NOTICE TO USERS:
July 5th, 2011 --
OTUs for Bv6v4 and Bv3v5 datasets have not been calculated yet. We are currently testing several promising new algorithms.
March 18th, 2011 --
Initial chimera checking and removal has been performed on all v6v4 and v3v5 sequences using the uchime option of USearch.
VAMPS is an integrated collection of tools for researchers to visualize and analyze data for microbial population structures and distributions. For more information on the VAMPS project, visit our VAMPS Overview page.
There are two essential elements to VAMPS:
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Visualization and Analysis - Community Visualization including heat maps and comparative pie charts, as well as diversity estimates, rarefaction curves and spreadsheet-style output provide researchers with analytical tools for assessing individual microbial populations, based on either taxonomic assignments or independently-derived operational taxonomic units (OTUs).
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Data Ramp - Researchers who want to use the VAMPS tools with their own data can enter their sequence or taxonomy data to the VAMPS website and merge it with the existing shared datasets for individual or comparative analyses. Researchers will be given a user name and password, and their data will be visible only to registered users of their choice.
Please see our Recent Updates page for more information.
Instructions for: SRA Sumbmissions of your VAMPS data.
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