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VAMPS
Software
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ARB: A graphical program for 16S rRNA alignments, and, with SILVA, the source of our reference set of aligned full-length rRNA sequences, RefSSU.
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MUSCLE: Multiple Sequence Comparison by Log-expectation - a multiple sequence aligner optimized for extremely large datasets.
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RDP Classifier: Ribosomal Database Project Classifier - associates hierarchical taxonomy (Bergey's manual) to 16S rRNA sequences.
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GAST: Global Alignment for Sequence Taxonomy - uses a reference database of SSU sequences to determine the taxonomy of hypervariable region tags. Download (100 KB).
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